ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ybhF1 - ECOD Domain | ECOD

ECOD/Domains/e6ybhF1

e6ybhF1

UID: 002736558

PDB

Range: F:12-228
PDB: 6YBH chain F(all domains)
UniProt: Q9XZT6 (all domains)
Gene: dnk

Molecule: Deoxynucleoside kinase

3D Structure

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Related Domains

Browse other domains in dNK →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilydNK(2004.1.1.70)

Ligands

in contact, ≤ 4 Å

Pyrrolo-dC8LK
within 5 Å only

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

Deoxynucleoside kinase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 6YBH RCSB PDB: 6YBH PDBe: 6YBH UniProt: Q9XZT6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.