ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yjfA1 - ECOD Domain | ECOD

ECOD/Domains/e6yjfA1

e6yjfA1

UID: 002736622

PDB

Range: A:191-416
PDB: 6YJF chain A(all domains)
UniProt: A0A1G4HAR7 (all domains)
Gene: PVC01_070025900

Molecule: Phosphoglycerate kinase

3D Structure

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Related Domains

Browse other domains in PGK →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphoglycerate kinase domain 2(7533)

HH-groupPhosphoglycerate kinase domain 2(7533.1)

TT-groupPhosphoglycerate kinase domain 2(7533.1.1)

FFamilyPGK(7533.1.1.1)

Ligands

in contact, ≤ 4 Å

(2~{S})-2-(5-nitrofuran-2-yl)-2,3,5,6,7,8-hexahydro-1~{H}-[1]benzothiolo[2,3-d]pyrimidin-4-oneOTQ

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Phosphoglycerate kinase

External Links

ECOD PDB View: 6YJF RCSB PDB: 6YJF PDBe: 6YJF UniProt: A0A1G4HAR7

Downloads

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