ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6ccvD3 - ECOD Domain | ECOD

ECOD/Domains/e6ccvD3

e6ccvD3

UID: 002738385

PDB

Range: D:4-147,D:230-408
PDB: 6CCV chain D(all domains)
UniProt: A0QS66 (all domains)
Gene: rpoC

Molecule: DNA-directed RNA polymerase subunit beta'

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb1_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246)

HH-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246.1)

TT-groupN-terminal domain in RNA-polymerase beta-prime subunit(4246.1.1)

FFamilyRNA_pol_Rpb1_1(4246.1.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOL

Pfam Families

PF04997RNA_pol_Rpb1_1

RNA polymerase Rpb1, domain 1

External Links

ECOD PDB View: 6CCV RCSB PDB: 6CCV PDBe: 6CCV UniProt: A0QS66

Downloads

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