ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6m60C2 - ECOD Domain | ECOD

ECOD/Domains/e6m60C2

e6m60C2

UID: 002755826

PDB

Range: C:0-655
PDB: 6M60 chain C(all domains)
UniProt: P30822 (all domains)
Gene: CRM1

Molecule: Exportin-1

3D Structure

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Related Domains

Browse other domains in Importin-beta N-terminal domain / Exportin 1-like protein / Chromosome region maintenance or exportin repeat / CRM1 / Exportin repeat 3 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyImportin-beta N-terminal domain / Exportin 1-like protein / Chromosome region maintenance or exportin repeat / CRM1 / Exportin repeat 3(109.4.1.52)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(2~{R})-2-methyl-5-oxidanyl-2,3-dihydronaphthalene-1,4-dioneF2X

+ 3 additives (Dimethyl sulfoxide, Glycerin, Nitrate)

Dimethyl sulfoxideDMS

Pfam Families

Importin-beta N-terminal domain

ClanCL0020TPR

Exportin 1-like protein

ClanCL0020TPR

PF18777CRM1_repeat

Chromosome region maintenance or exportin repeat

ClanCL0020TPR

PF18787CRM1_repeat_3

CRM1 / Exportin repeat 3

External Links

ECOD PDB View: 6M60 RCSB PDB: 6M60 PDBe: 6M60 UniProt: P30822

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

GlycerinGOL

DrugBank DB09462

NitrateNO3

DrugBank DB14049

Shown in the structure viewer. Drug annotations from DrugDomain.

TPR