ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6zo5A3 - ECOD Domain | ECOD

ECOD/Domains/e6zo5A3

e6zo5A3

UID: 002768890

PDB

Range: A:725-812
PDB: 6ZO5 chain A(all domains)

Molecule: Multidrug efflux pump subunit AcrB

3D Structure

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Related Domains

Browse other domains in ACR_tran →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFerredoxin domains in multidrug efflux transporter(304.28)

TT-groupMultidrug efflux transporter AcrB TolC docking domain(304.28.2)

FFamilyACR_tran(304.28.2.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Sulfate ion, 1,2-ETHANEDIOL, Glycerol)

Sulfate ionSO4
DrugBank DB14546within 5 Å only
1,2-ETHANEDIOLEDO
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00873ACR_tran

AcrB/AcrD/AcrF family

ClanCL0322RND_permease

External Links

ECOD PDB View: 6ZO5 RCSB PDB: 6ZO5 PDBe: 6ZO5

Downloads

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