ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6zo5B8 - ECOD Domain | ECOD

ECOD/Domains/e6zo5B8

e6zo5B8

UID: 002768903

PDB

Range: B:1-37,B:331-504
PDB: 6ZO5 chain B(all domains)

Molecule: Multidrug efflux pump subunit AcrB

3D Structure

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Related Domains

Browse other domains in ACR_tran →

Classification

AArchitecturealpha bundles(a.7)

XX-groupMultidrug efflux transporter AcrB transmembrane domain(5067)

HH-groupMultidrug efflux transporter AcrB transmembrane domain(5067.1)

TT-groupMultidrug efflux transporter AcrB transmembrane domain(5067.1.1)

FFamilyACR_tran(5067.1.1.1)

Ligands

in contact, ≤ 4 Å

Fusidic acidFUA
drugDrugBank DB02703
TetradecaneC14
(2S)-3-hydroxypropane-1,2-diyl didecanoateDDR

Pfam Families

PF00873ACR_tran

AcrB/AcrD/AcrF family

ClanCL0322RND_permease

External Links

ECOD PDB View: 6ZO5 RCSB PDB: 6ZO5 PDBe: 6ZO5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

HexaneHEX

(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoateLPX

PhosphatidylethanolaminePTY

+ 2 additives (Dodecyl-beta-d-maltoside, Sulfate ion)

Dodecyl-beta-d-maltosideLMT
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.