ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6zo8B3 - ECOD Domain | ECOD

ECOD/Domains/e6zo8B3

e6zo8B3

UID: 002768968

PDB

Range: B:505-566,B:869-1034
PDB: 6ZO8 chain B(all domains)

Molecule: Multidrug efflux pump subunit AcrB

3D Structure

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Related Domains

Browse other domains in ACR_tran →

Classification

AArchitecturealpha bundles(a.7)

XX-groupMultidrug efflux transporter AcrB transmembrane domain(5067)

HH-groupMultidrug efflux transporter AcrB transmembrane domain(5067.1)

TT-groupMultidrug efflux transporter AcrB transmembrane domain(5067.1.1)

FFamilyACR_tran(5067.1.1.1)

Ligands

in contact, ≤ 4 Å

Dodecyl-Alpha-D-MaltosideLMU
drugDrugBank DB03279
TetradecaneC14
DecaneD10

Pfam Families

PF00873ACR_tran

AcrB/AcrD/AcrF family

ClanCL0322RND_permease

External Links

ECOD PDB View: 6ZO8 RCSB PDB: 6ZO8 PDBe: 6ZO8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DodecaneD12

(2S)-3-hydroxypropane-1,2-diyl didecanoateDDR

PhosphatidylethanolaminePTY

+ 2 additives (Glycerin, Dodecyl-beta-d-maltoside)

GlycerinGOL
DrugBank DB09462
Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.