ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ki5A1 - ECOD Domain | ECOD

ECOD/Domains/e7ki5A1

e7ki5A1

UID: 002771760

PDB

Range: A:2-159
PDB: 7KI5 chain A(all domains)

Molecule: Capsid protein

3D Structure

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Related Domains

Browse other domains in VP4_haemagglut →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyVP4_haemagglut(10.1.1.6)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Triethylene glycol)

GlycerinGOL
DrugBank DB09462
Triethylene glycolPGE
DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00426VP4_haemagglut

Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 7KI5 RCSB PDB: 7KI5 PDBe: 7KI5

Downloads

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