ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6kguA1 - ECOD Domain | ECOD

ECOD/Domains/e6kguA1

e6kguA1

UID: 002774044

PDB

Range: A:314-381,A:503-679
PDB: 6KGU chain A(all domains)

Molecule: Penicillin-binding protein PbpB

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

AztreonamAZR
drugDrugBank DB00355
COBALT (II) IONCO
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 6KGU RCSB PDB: 6KGU PDBe: 6KGU

Downloads

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