ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6topB1 - ECOD Domain | ECOD

ECOD/Domains/e6topB1

e6topB1

UID: 002774284

PDB

Range: B:-15-668
PDB: 6TOP chain B(all domains)

Molecule: OmpA family protein

3D Structure

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Related Domains

Browse other domains in OmpA →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-groupOmpA-like(301.3)

TT-groupOmpA-like(301.3.1)

FFamilyOmpA(301.3.1.1)

Ligands

in contact, ≤ 4 Å

2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE(BETA1-4)-2-ACETAMIDO-1,6-ANHYDRO-3-O-[(R)-1-CARBOXYETHYL]-2-DEOXY-BETA-D-GLUCOPYRANOSE-L-ALANYL-GAMMA-D-GLUTAMYL-MESO-DIAMINOPIMELYL-D-ALANINEMLD
drugDrugBank DB04736
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

OmpA family

External Links

ECOD PDB View: 6TOP RCSB PDB: 6TOP PDBe: 6TOP

Downloads

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