ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ydmC1 - ECOD Domain | ECOD

ECOD/Domains/e1ydmC1

e1ydmC1

UID: 000277480

PDB

Range: C:4-186
PDB: 1YDM chain C(all domains)
UniProt: P54491 (all domains)
Gene: yqgN

Molecule: Hypothetical protein yqgN

3D Structure

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Related Domains

Browse other domains in 5-FTHF_cyc-lig →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNagB/RpiA/CoA transferase-like(2003.1.7)

FFamily5-FTHF_cyc-lig(2003.1.7.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF018125-FTHF_cyc-lig

5-formyltetrahydrofolate cyclo-ligase family

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 1YDM RCSB PDB: 1YDM PDBe: 1YDM UniProt: P54491

Downloads

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