ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ndwC1 - ECOD Domain | ECOD

ECOD/Domains/e7ndwC1

e7ndwC1

UID: 002782529

PDB

Range: C:1-219
PDB: 7NDW chain C(all domains)

Molecule: Flavin-dependent thymidylate synthase

3D Structure

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Related Domains

Browse other domains in Thy1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupThymidylate synthase-complementing protein Thy1(842)

HH-groupThymidylate synthase-complementing protein Thy1(842.1)

TT-groupThymidylate synthase-complementing protein Thy1(842.1.1)

FFamilyThy1(842.1.1.1)

Ligands

in contact, ≤ 4 Å

Dihydroflavine-adenine dinucleotideFDA
[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4S)-5-[5-methanoyl-7,8-dimethyl-2,4-bis(oxidanylidene)-1H-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphateHUF

+ 2 additives (Phosphate ion, Tetraethylene glycol)

Pfam Families

Thymidylate synthase complementing protein

External Links

ECOD PDB View: 7NDW RCSB PDB: 7NDW PDBe: 7NDW

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Phosphate ionPO4

DrugBank DB14523

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.