ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5sbtA1 - ECOD Domain | ECOD

ECOD/Domains/e5sbtA1

e5sbtA1

UID: 002785759

PDB

Range: A:24-173
PDB: 5SBT chain A(all domains)

Molecule: CD44 antigen

3D Structure

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Related Domains

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Classification

AArchitecturea+b complex topology(a.14)

XX-groupC-type lectin-like(209)

HH-groupC-type lectin-like(209.1)

TT-groupC-type lectin-like(209.1.1)

FFamilyXlink(209.1.1.4)

Ligands

in contact, ≤ 4 Å

N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-methyl-N'-propan-2-ylureaVZP

+ 2 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL)

Dimethyl sulfoxideDMS
DrugBank DB01093
1,2-ETHANEDIOL

Pfam Families

Extracellular link domain

ClanCL0056C_Lectin

External Links

ECOD PDB View: 5SBT RCSB PDB: 5SBT PDBe: 5SBT

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.