ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ybuA1 - ECOD Domain | ECOD

ECOD/Domains/e1ybuA1

e1ybuA1

UID: 000278627

PDB

Range: A:291-456
PDB: 1YBU chain A(all domains)
UniProt: O07732 (all domains)
Gene: lipJ

Molecule: lipJ

3D Structure

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Related Domains

Browse other domains in Guanylate_cyc →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyGuanylate_cyc(304.48.1.4)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00211Guanylate_cyc

Adenylate and Guanylate cyclase catalytic domain

ClanCL0276Nucleot_cyclase

External Links

ECOD PDB View: 1YBU RCSB PDB: 1YBU PDBe: 1YBU UniProt: O07732

Downloads

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