ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1xdjB1 - ECOD Domain | ECOD

ECOD/Domains/e1xdjB1

e1xdjB1

UID: 000279332

PDB

Range: B:364-730
PDB: 1XDJ chain B(all domains)
UniProt: Q9X112 (all domains)
Gene: metE

Molecule: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase

3D Structure

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Related Domains

Browse other domains in Meth_synt_2 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyMeth_synt_2(2002.1.1.74)

Ligands

in contact, ≤ 4 Å

HomocysteineHCS
drugDrugBank DB04422
ErythritolMRY
drugDrugBank DB04481
Zinc ion

Pfam Families

PF01717Meth_synt_2

Cobalamin-independent synthase, Catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1XDJ RCSB PDB: 1XDJ PDBe: 1XDJ UniProt: Q9X112

Downloads

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metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.