ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1w19E1 - ECOD Domain | ECOD

ECOD/Domains/e1w19E1

e1w19E1

UID: 000279586

PDB

Range: E:15-160
PDB: 1W19 chain E(all domains)
UniProt: P9WHE9 (all domains)
Gene: ribH

Molecule: 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

(4S,5S)-1,2-dithiane-4,5-diolD1D
drugDrugBank DB02693
D-1,4-dithiothreitolDTV
drugDrugBank DB02184

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 1W19 RCSB PDB: 1W19 PDBe: 1W19 UniProt: P9WHE9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

3-[2,6,8-Trioxo-9-[(2R,3R,4R)-2,3,4,5-tetrahydroxypentyl]-3H-purin-7-yl]propyl dihydrogen phosphateT4P

drugDrugBank DB03973

Potassium ionK

metal

+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.