ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yclA1 - ECOD Domain | ECOD

ECOD/Domains/e1yclA1

e1yclA1

UID: 000279862

PDB

Range: A:4-157
PDB: 1YCL chain A(all domains)
UniProt: O34667 (all domains)
Gene: luxS

Molecule: S-ribosylhomocysteinase

3D Structure

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Related Domains

Browse other domains in LuxS →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyLuxS(309.1.1.3)

Ligands

in contact, ≤ 4 Å

(S)-2-Amino-4-[(2s,3r)-2,3,5-Trihydroxy-4-Oxo-Pentyl]Mercapto-Butyric AcidKRI
drugDrugBank DB04182
COBALT (II) IONCO
metal

Pfam Families

S-Ribosylhomocysteinase (LuxS)

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 1YCL RCSB PDB: 1YCL PDBe: 1YCL UniProt: O34667

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.