ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7pqdl1 - ECOD Domain | ECOD

ECOD/Domains/e7pqdl1

e7pqdl1

UID: 002803444

PDB

Range: l:1-281
PDB: 7PQD chain l(all domains)

Molecule: RC-L

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

1,2-Distearoyl-sn-glycerophosphoethanolamine3PE
Bacteriochlorophyll aBCL
Bacteriopheophytin aBPH
(2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoateCD4
FE (III) IONFE
metal

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 7PQD RCSB PDB: 7PQD PDBe: 7PQD

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

3,4-DIHYDROSPHEROIDENESP2

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

UBIQUINONE-10U10

UBIQUINONE-1UQ1

Shown in the structure viewer.