ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7rrmB1 - ECOD Domain | ECOD

ECOD/Domains/e7rrmB1

e7rrmB1

UID: 002805533

PDB

Range: B:33-131
PDB: 7RRM chain B(all domains)

Molecule: Transmembrane emp24 domain-containing protein 1

3D Structure

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Related Domains

Browse other domains in EMP24_GP25L →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupGalactose-binding domain-like(10.32)

TT-groupGalactose-binding domain-like(10.32.1)

FFamilyEMP24_GP25L(10.32.1.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, (4r)-2-Methylpentane-2,4-Diol)

AcetateACT
DrugBank DB14511
(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer.

Pfam Families

PF01105EMP24_GP25L

emp24/gp25L/p24 family/GOLD

ClanCL0521GOLD-like

External Links

ECOD PDB View: 7RRM RCSB PDB: 7RRM PDBe: 7RRM

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.