ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e6yvmA1 - ECOD Domain | ECOD

ECOD/Domains/e6yvmA1

e6yvmA1

UID: 002808847

PDB

Range: A:224-479
PDB: 6YVM chain A(all domains)

Molecule: Uridine 5'-monophosphate synthase

3D Structure

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Related Domains

Browse other domains in OMPdecase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOMPdecase(2002.1.1.9)

Ligands

in contact, ≤ 4 Å

Orotidylic acidOMP
drugDrugBank DB02957
Uridine monophosphateU
drugDrugBank DB03685within 5 Å only

Pfam Families

PF00215OMPdecase

Orotidine 5'-phosphate decarboxylase / HUMPS family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 6YVM RCSB PDB: 6YVM PDBe: 6YVM

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.