ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1swpB1 - ECOD Domain | ECOD

ECOD/Domains/e1swpB1

e1swpB1

UID: 000028121

PDB

Range: B:16-132
PDB: 1SWP chain B(all domains)
UniProt: P22629 (all domains)

Molecule: CORE-STREPTAVIDIN

3D Structure

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Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

BiotinBTN
drugDrugBank DB00121
5-[(3AS,4R,6AR)-2-OXOHEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL]PENTANOIC ACIDBTQ
drugDrugBank DB04650within 5 Å only

Pfam Families

Avidin family

External Links

ECOD PDB View: 1SWP RCSB PDB: 1SWP PDBe: 1SWP UniProt: P22629

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.