ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ym1A2 - ECOD Domain | ECOD

ECOD/Domains/e1ym1A2

e1ym1A2

UID: 000281740

PDB

Range: A:25-64,A:179-290
PDB: 1YM1 chain A(all domains)
UniProt: Q9L5C8 (all domains)
Gene: blaCTX-M-9a

Molecule: beta-lactamase CTX-M-9a

3D Structure

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Related Domains

Browse other domains in Beta-lactamase2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyBeta-lactamase2(223.3.1.8)

Ligands

in contact, ≤ 4 Å

3-{(R)-(Dihydroxyboryl)[(2-thienylacetyl)amino]methyl}benzoic acidSM2
drugDrugBank DB08551

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13354Beta-lactamase2

Beta-lactamase enzyme family

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 1YM1 RCSB PDB: 1YM1 PDBe: 1YM1 UniProt: Q9L5C8

Downloads

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