ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2rtfD1 - ECOD Domain | ECOD

ECOD/Domains/e2rtfD1

e2rtfD1

UID: 000028197

PDB

Range: D:14-133
PDB: 2RTF chain D(all domains)
UniProt: P22629 (all domains)

Molecule: STREPTAVIDIN

3D Structure

Loading viewer...

Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

BiotinBTN
drugDrugBank DB00121

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

Avidin family

External Links

ECOD PDB View: 2RTF RCSB PDB: 2RTF PDBe: 2RTF UniProt: P22629

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.