ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7skaB1 - ECOD Domain | ECOD

ECOD/Domains/e7skaB1

e7skaB1

UID: 002833503

PDB

Range: B:521-547,B:569-662
PDB: 7SKA chain B(all domains)

Molecule: Envelope glycoprotein gp41

3D Structure

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Related Domains

Browse other domains in GP41 →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupMPER trimer(3567)

HH-groupMPER trimer(3567.1)

TT-groupMPER trimer(3567.1.1)

FFamilyGP41(3567.1.1.2)

Ligands

in contact, ≤ 4 Å

alpha-L-fucoseFUC
drugDrugBank DB04473within 5 Å only
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral envelope protein

External Links

ECOD PDB View: 7SKA RCSB PDB: 7SKA PDBe: 7SKA

Downloads

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