ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5skwD2 - ECOD Domain | ECOD

ECOD/Domains/e5skwD2

e5skwD2

UID: 002833569

PDB

Range: D:289-524
PDB: 5SKW chain D(all domains)

Molecule: Proofreading exoribonuclease nsp14

3D Structure

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Related Domains

Browse other domains in CoV_ExoN →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyCoV_ExoN(2003.1.5.57)

Ligands

in contact, ≤ 4 Å

{(1R,2R)-2-[(Z)-(3-methyl-1,2,4-thiadiazol-5(2H)-ylidene)amino]cyclopentyl}methanolLF6
Zinc ionZN
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Pfam Families

PF06471CoV_ExoN

Coronavirus proofreading exoribonuclease

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5SKW RCSB PDB: 5SKW PDBe: 5SKW

Downloads

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DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.