ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1i78B1 - ECOD Domain | ECOD

ECOD/Domains/e1i78B1

e1i78B1

UID: 000028409

PDB

Range: B:11-297
PDB: 1I78 chain B(all domains)
UniProt: P09169 (all domains)
Gene: ompT

Molecule: PROTEASE VII

3D Structure

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Related Domains

Browse other domains in Omptin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupOMPT-like(5084.2)

TT-groupOMPT-like(5084.2.1)

FFamilyOmptin(5084.2.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, octyl beta-D-glucopyranoside)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564
octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Omptin family

ClanCL0193MBB

External Links

ECOD PDB View: 1I78 RCSB PDB: 1I78 PDBe: 1I78 UniProt: P09169

Downloads

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