ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7megA1 - ECOD Domain | ECOD

ECOD/Domains/e7megA1

e7megA1

UID: 002846716

PDB

Range: A:60-98,A:206-309
PDB: 7MEG chain A(all domains)

Molecule: Beta-lactamase

3D Structure

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Related Domains

Browse other domains in Transpeptidase →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3)

TT-groupa+b domain in beta-lactamase/transpeptidase-like proteins(223.3.1)

FFamilyTranspeptidase(223.3.1.3)

Ligands

in contact, ≤ 4 Å

(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamideNXL

+ 3 additives (Imidazole, (4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

ImidazoleIMD
DrugBank DB03366
(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF00905Transpeptidase

Penicillin binding protein transpeptidase domain

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 7MEG RCSB PDB: 7MEG PDBe: 7MEG

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.