ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ydoB1 - ECOD Domain | ECOD

ECOD/Domains/e1ydoB1

e1ydoB1

UID: 000284812

PDB

Range: B:1-298
PDB: 1YDO chain B(all domains)
UniProt: O34873 (all domains)
Gene: yngG

Molecule: HMG-CoA Lyase

3D Structure

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Related Domains

Browse other domains in HMGL-like →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyHMGL-like(2002.1.1.25)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00682HMGL-like

HMGL-like

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 1YDO RCSB PDB: 1YDO PDBe: 1YDO UniProt: O34873

Downloads

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