ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7od5M1 - ECOD Domain | ECOD

ECOD/Domains/e7od5M1

e7od5M1

UID: 002849699

PDB

Range: M:1-303
PDB: 7OD5 chain M(all domains)

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
UbidecarenoneU10
drugDrugBank DB09270
Bacteriopheophytin a

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 7OD5 RCSB PDB: 7OD5 PDBe: 7OD5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

FE (III) IONFE

metal

(2R)-2-hydroxy-3-(phosphonooxy)propyl (9E)-octadec-9-enoateNKP

SperoidenoneSPN

Unknown ligandUNL

(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLC

within 5 Å only

+ 2 additives (Dodecyldimethylamine N-oxide, 1,2-ETHANEDIOL)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.