ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e7p9iA1 - ECOD Domain | ECOD

ECOD/Domains/e7p9iA1

e7p9iA1

UID: 002850682

PDB

Range: A:3-280
PDB: 7P9I chain A(all domains)

Molecule: Ribosomal RNA large subunit methyltransferase J

3D Structure

Loading viewer...

Related Domains

Browse other domains in RsmJ →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyRsmJ(2003.1.5.37)

Ligands

in contact, ≤ 4 Å

5'-{[(3S)-3-amino-3-carboxypropyl](3-aminopropyl)amino}-5'-deoxyadenosine6D6

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ribosomal RNA large subunit methyltransferase D, RlmJ

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 7P9I RCSB PDB: 7P9I PDBe: 7P9I

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure