ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7qhmR1 - ECOD Domain | ECOD

ECOD/Domains/e7qhmR1

e7qhmR1

UID: 002857541

PDB

Range: R:137-359
PDB: 7QHM chain R(all domains)

Molecule: Cytochrome c oxidase subunit 2

3D Structure

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Related Domains

Browse other domains in COX2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupCupredoxin-like(3156)

HH-groupCupredoxin-related(3156.1)

TT-groupCupredoxin-related(3156.1.1)

FFamilyCOX2(3156.1.1.1)

Ligands

in contact, ≤ 4 Å

Dinuclear copper ionCUA
Heme cHEC
[(2~{R})-3-[[(1~{S},2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hexadecanoyloxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{S})-10-methylhenicosanoateIX7

Pfam Families

Cytochrome C oxidase subunit II, periplasmic domain

ClanCL0026CU_oxidase

External Links

ECOD PDB View: 7QHM RCSB PDB: 7QHM PDBe: 7QHM

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

MANGANESE (II) IONMN

metal

1,2-Distearoyl-sn-glycerophosphoethanolamine3PE

within 5 Å only

Heme-asHAS

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.