ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5sm1D1 - ECOD Domain | ECOD

ECOD/Domains/e5sm1D1

e5sm1D1

UID: 002861091

PDB

Range: D:24-122,D:151-289
PDB: 5SM1 chain D(all domains)

Molecule: Proofreading exoribonuclease nsp14

3D Structure

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Related Domains

Browse other domains in CoV_ExoN →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyCoV_ExoN(2484.1.1.52)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06471CoV_ExoN

Coronavirus proofreading exoribonuclease

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5SM1 RCSB PDB: 5SM1 PDBe: 5SM1

Downloads

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