ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7vc0l1 - ECOD Domain | ECOD

ECOD/Domains/e7vc0l1

e7vc0l1

UID: 002869663

PDB

Range: l:1-606
PDB: 7VC0 chain l(all domains)

Molecule: NADH-ubiquinone oxidoreductase chain 5

3D Structure

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Related Domains

Browse other domains in Proton_antipo_M,Proton_antipo_N,NADH5_C →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupSodium/proton antiporter subunits-like(3281)

HH-groupSodium/proton antiporter subunits-like(3281.1)

TT-groupNADH-quinone oxidoreductase subunit L (NuoL)-related(3281.1.1)

FFamilyProton_antipo_M,Proton_antipo_N,NADH5_C(3281.1.1.4)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
PhosphatidylethanolaminePEE
drugDrugBank DB04327

Pfam Families

PF00361Proton_antipo_M

NADH:quinone oxidoreductase/Mrp antiporter, TM

ClanCL0425ComplexI-N

PF00662Proton_antipo_N

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus

PF06455NADH5_C

NADH dehydrogenase subunit 5 C-terminus

External Links

ECOD PDB View: 7VC0 RCSB PDB: 7VC0 PDBe: 7VC0

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL

S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate8Q1

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.