ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8d87B1 - ECOD Domain | ECOD

ECOD/Domains/e8d87B1

e8d87B1

UID: 002877190

PDB

Range: B:293-391
PDB: 8D87 chain B(all domains)

Molecule: Spike glycoprotein E1

3D Structure

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Related Domains

Browse other domains in Alpha_E1_glycop →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyAlpha_E1_glycop(11.1.1.28)

Ligands

in contact, ≤ 4 Å

Holmium atomHO
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01589Alpha_E1_glycop

Alphavirus E1 glycoprotein

ClanCL0543Viral_gly_cn_dm

External Links

ECOD PDB View: 8D87 RCSB PDB: 8D87 PDBe: 8D87

Downloads

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