ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dp2A1 - ECOD Domain | ECOD

ECOD/Domains/e8dp2A1

e8dp2A1

UID: 002877890

PDB

Range: A:99-300
PDB: 8DP2 chain A(all domains)

Molecule: UDP-N-acetylmuramoylalanine--D-glutamate ligase

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

Succinic acidSIN
drugDrugBank DB00139
Uridine-5'-Diphosphate-N-Acetylmuramoyl-L-AlanineUMA
drugDrugBank DB01673

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 8DP2 RCSB PDB: 8DP2 PDBe: 8DP2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metal

+ 3 additives (Glycerin, Phosphate ion, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL)

GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOLPE8

Shown in the structure viewer. Drug annotations from DrugDomain.