ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dp2A3 - ECOD Domain | ECOD

ECOD/Domains/e8dp2A3

e8dp2A3

UID: 002877892

PDB

Range: A:3-98
PDB: 8DP2 chain A(all domains)

Molecule: UDP-N-acetylmuramoylalanine--D-glutamate ligase

3D Structure

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Related Domains

Browse other domains in MurD-like_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupMurCD/PglD N-terminal domain-like(2003.1.8)

FFamilyMurD-like_N(2003.1.8.4)

Ligands

in contact, ≤ 4 Å

Uridine-5'-Diphosphate-N-Acetylmuramoyl-L-AlanineUMA
drugDrugBank DB01673

+ 2 additives (Glycerin, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF21799MurD-like_N

Mur ligase MurD-like, N-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 8DP2 RCSB PDB: 8DP2 PDBe: 8DP2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOLPE8

Shown in the structure viewer. Drug annotations from DrugDomain.