ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e7pbqF1 - ECOD Domain | ECOD

ECOD/Domains/e7pbqF1

e7pbqF1

UID: 002882051

PDB

Range: F:19-179
PDB: 7PBQ chain F(all domains)

Molecule: Holliday junction ATP-dependent DNA helicase RuvB

3D Structure

Loading viewer...

Related Domains

Browse other domains in RuvB_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRuvB_N(2004.1.1.125)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Adenosine 5'-[gamma-thio]triphosphateAGS
drugDrugBank DB02930

Pfam Families

Holliday junction DNA helicase RuvB P-loop domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 7PBQ RCSB PDB: 7PBQ PDBe: 7PBQ

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Magnesium ionMG

metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.