ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1xn1E1 - ECOD Domain | ECOD

ECOD/Domains/e1xn1E1

e1xn1E1

UID: 000288260

PDB

Range: E:9-153
PDB: 1XN1 chain E(all domains)
UniProt: P61711 (all domains)
Gene: ribH2

Molecule: 6,7-dimethyl-8-ribityllumazine synthase

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (Phosphate ion, Sulfate ion)

Phosphate ionPO4
DrugBank DB14523
Sulfate ionSO4

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 1XN1 RCSB PDB: 1XN1 PDBe: 1XN1 UniProt: P61711

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.