ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7sr6B3 - ECOD Domain | ECOD

ECOD/Domains/e7sr6B3

e7sr6B3

UID: 002887453

PDB

Range: B:330-451
PDB: 7SR6 chain B(all domains)

Molecule: Polymerase

3D Structure

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Related Domains

Browse other domains in RNaseH_ERVK-8 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRNaseH-like domain in reverse transcriptase(2484.5)

TT-groupRNaseH-like domain in reverse transcriptase(2484.5.1)

FFamilyRNaseH_ERVK-8(2484.5.1.4)

Ligands

in contact, ≤ 4 Å

PentaglymePG6
drugDrugBank DB02580
Potassium ionK
metalwithin 5 Å only

+ 2 additives (1,4-Dioxane, 1,2-ETHANEDIOL)

Pfam Families

PF27608RNaseH_ERVK-8

ERVK-8-like, RNaseH-like domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 7SR6 RCSB PDB: 7SR6 PDBe: 7SR6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,4-DioxaneDIO
DrugBank DB03316
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.