ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2c1lB1 - ECOD Domain | ECOD

ECOD/Domains/e2c1lB1

e2c1lB1

UID: 000288935

PDB

Range: B:195-358
PDB: 2C1L chain B(all domains)
UniProt: Q9F4C9 (all domains)
Gene: R

Molecule: RESTRICTION ENDONUCLEASE

3D Structure

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Related Domains

Browse other domains in BfiI_DBD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupType II restriction endonuclease effector domain(1.1.11)

FFamilyBfiI_DBD(1.1.11.3)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459

+ 3 additives (Glycerin, Tromethamine, Bicarbonate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF18243BfiI_DBD

Metal-independent restriction enzyme BfiI DNA binding domain

ClanCL0405DNA_b-psBarrel

External Links

ECOD PDB View: 2C1L RCSB PDB: 2C1L PDBe: 2C1L UniProt: Q9F4C9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

TromethamineTRS

DrugBank DB03754

Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.