ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2c5uB2 - ECOD Domain | ECOD

ECOD/Domains/e2c5uB2

e2c5uB2

UID: 000290169

PDB

Range: B:253-374
PDB: 2C5U chain B(all domains)
UniProt: P00971 (all domains)
Gene: 63

Molecule: RNA LIGASE

3D Structure

Loading viewer...

Related Domains

Browse other domains in T4_Rnl1_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupT4 RNA ligase(3614)

HH-groupT4 RNA ligase(3614.1)

TT-groupT4 RNA ligase (Rnl1) C-terminal domain(3614.1.1)

FFamilyT4_Rnl1_C(3614.1.1.1)

Ligands

in contact, ≤ 4 Å

alpha,beta-Methyleneadenosine 5'-triphosphateAPC
drugDrugBank DB02596
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF20819T4_Rnl1_C

T4 RNA ligase 1, C-terminal domain

External Links

ECOD PDB View: 2C5U RCSB PDB: 2C5U PDBe: 2C5U UniProt: P00971

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure