ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1xjjB1 - ECOD Domain | ECOD

ECOD/Domains/e1xjjB1

e1xjjB1

UID: 000292709

PDB

Range: B:130-633
PDB: 1XJJ chain B(all domains)
UniProt: O33839 (all domains)
Gene: nrdJ

Molecule: ribonucleotide reductase, B12-dependent

3D Structure

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Related Domains

Browse other domains in Ribonuc_red_lgC →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTen stranded beta/alpha barrel(2500)

HH-groupTen stranded beta/alpha barrel(2500.1)

TT-groupTen stranded beta/alpha barrel(2500.1.1)

FFamilyRibonuc_red_lgC(2500.1.1.2)

Ligands

in contact, ≤ 4 Å

2'-Deoxyguanosine-5'-TriphosphateDGT
drugDrugBank DB02181
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer.

Pfam Families

PF02867Ribonuc_red_lgC

Ribonucleotide reductase, barrel domain

ClanCL0339PFL-like

External Links

ECOD PDB View: 1XJJ RCSB PDB: 1XJJ PDBe: 1XJJ UniProt: O33839

Downloads

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Drug annotations from DrugDomain.