ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yhmA1 - ECOD Domain | ECOD

ECOD/Domains/e1yhmA1

e1yhmA1

UID: 000292729

PDB

Range: A:1-362
PDB: 1YHM chain A(all domains)
UniProt: Q8WS26 (all domains)

Molecule: farnesyl pyrophosphate synthase

3D Structure

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Related Domains

Browse other domains in polyprenyl_synt →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTerpenoid synthases(141)

HH-groupTerpenoid synthases(141.1)

TT-groupTerpenoid synthases(141.1.1)

FFamilypolyprenyl_synt(141.1.1.1)

Ligands

in contact, ≤ 4 Å

ISOPENTENYL PYROPHOSPHATEIPE
drugDrugBank DB04714
4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATEAHD
Magnesium ionMG

Pfam Families

PF00348polyprenyl_synt

Polyprenyl synthetase

ClanCL0613Terp_synthase

External Links

ECOD PDB View: 1YHM RCSB PDB: 1YHM PDBe: 1YHM UniProt: Q8WS26

Downloads

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metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.