ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2b13A1 - ECOD Domain | ECOD

ECOD/Domains/e2b13A1

e2b13A1

UID: 000293208

PDB

Range: A:185-315
PDB: 2B13 chain A(all domains)
UniProt: O33599 (all domains)
Gene: lytM

Molecule: Glycyl-glycine endopeptidase lytM

3D Structure

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Related Domains

Browse other domains in Peptidase_M23 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupDuplicated hybrid motif(325.1.6)

FFamilyPeptidase_M23(325.1.6.2)

Ligands

in contact, ≤ 4 Å

L-tartaric acidTLA
drugDrugBank DB09459
Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01551Peptidase_M23

Peptidase family M23

ClanCL0105Hybrid

External Links

ECOD PDB View: 2B13 RCSB PDB: 2B13 PDBe: 2B13 UniProt: O33599

Downloads

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