ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yk5D1 - ECOD Domain | ECOD

ECOD/Domains/e1yk5D1

e1yk5D1

UID: 000293820

PDB

Range: D:1-53
PDB: 1YK5 chain D(all domains)
UniProt: Q9V099 (all domains)
Gene: rub

Molecule: Rubredoxin

3D Structure

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Related Domains

Browse other domains in Rubredoxin →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRubredoxin(375.1.1.2)

Ligands

in contact, ≤ 4 Å

FE (III) IONFE
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00301Rubredoxin

Rubredoxin

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 1YK5 RCSB PDB: 1YK5 PDBe: 1YK5 UniProt: Q9V099

Downloads

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