ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2avmA1 - ECOD Domain | ECOD

ECOD/Domains/e2avmA1

e2avmA1

UID: 000293966

PDB

Range: A:1-99
PDB: 2AVM chain A(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: HIV-1 protease

3D Structure

Loading viewer...

Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide2NC

+ 2 additives (Glycerin, Acetic acid)

GlycerinGOL
DrugBank DB09462
Acetic acid

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2AVM RCSB PDB: 2AVM PDBe: 2AVM UniProt: P04587

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.