ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2avmB1 - ECOD Domain | ECOD

ECOD/Domains/e2avmB1

e2avmB1

UID: 000293967

PDB

Range: B:1-99
PDB: 2AVM chain B(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: HIV-1 protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide2NC

+ 2 additives (Acetic acid, Glycerin)

Acetic acidACY
DrugBank DB03166
Glycerin

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2AVM RCSB PDB: 2AVM PDBe: 2AVM UniProt: P04587

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.