ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ytmB1 - ECOD Domain | ECOD

ECOD/Domains/e1ytmB1

e1ytmB1

UID: 000294324

PDB

Range: B:1220-1518
PDB: 1YTM chain B(all domains)
UniProt: O09460 (all domains)
Gene: pckA

Molecule: phosphoenolpyruvate carboxykinase [ATP]

3D Structure

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Related Domains

Browse other domains in PEPCK_ATP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupPEP carboxykinase catalytic C-terminal domain(2004.1.2)

FFamilyPEPCK_ATP(2004.1.2.2)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
Oxalic AcidOXD
drugDrugBank DB03902
Magnesium ion

Pfam Families

PF01293PEPCK_ATP

Phosphoenolpyruvate carboxykinase

ClanCL0374PEP-carboxyk

External Links

ECOD PDB View: 1YTM RCSB PDB: 1YTM PDBe: 1YTM UniProt: O09460

Downloads

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metal

MANGANESE (II) IONMN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.