ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2cdpC1 - ECOD Domain | ECOD

ECOD/Domains/e2cdpC1

e2cdpC1

UID: 000295368

PDB

Range: C:4-138
PDB: 2CDP chain C(all domains)
UniProt: Q6DN99 (all domains)
Gene: agaB

Molecule: BETA-AGARASE 1

3D Structure

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Related Domains

Browse other domains in CBM_6 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupGalactose-binding domain-like(10.32)

TT-groupGalactose-binding domain-like(10.32.1)

FFamilyCBM_6(10.32.1.12)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

Carbohydrate binding module (family 6)

ClanCL0202GBD

External Links

ECOD PDB View: 2CDP RCSB PDB: 2CDP PDBe: 2CDP UniProt: Q6DN99

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.