ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2f8gA1 - ECOD Domain | ECOD

ECOD/Domains/e2f8gA1

e2f8gA1

UID: 000296724

PDB

Range: A:1-99
PDB: 2F8G chain A(all domains)
UniProt: P04587 (all domains)
Gene: gag-pol

Molecule: POL POLYPROTEIN

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Darunavir017
drugDrugBank DB01264
Chloride ionCL
Sodium ionNA

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 2F8G RCSB PDB: 2F8G PDBe: 2F8G UniProt: P04587

Downloads

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metal

+ 1 additive (Acetic acid)

Acetic acidACY
DrugBank DB03166

Shown in the structure viewer. Drug annotations from DrugDomain.